Package org.itk.simple
Class BinaryGrindPeakImageFilter
java.lang.Object
org.itk.simple.ProcessObject
org.itk.simple.ImageFilter
org.itk.simple.BinaryGrindPeakImageFilter
Remove the objects not connected to the boundary of the image.
BinaryGrindPeakImageFilter grinds peaks in a grayscale image.
Geodesic morphology and the grind peak algorithm is described in
Chapter 6 of Pierre Soille's book "Morphological Image Analysis:
Principles and Applications", Second Edition, Springer, 2003.
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA
de Jouy-en-Josas, France.
This implementation was taken from the Insight Journal paper: https://www.insight-journal.org/browse/publication/176
See:
GrayscaleGrindPeakImageFilter
itk::simple::BinaryGrindPeak for the procedural interface
itk::BinaryGrindPeakImageFilter for the Doxygen on the original ITK class.
C++ includes: sitkBinaryGrindPeakImageFilter.h
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Field Summary
Fields inherited from class org.itk.simple.ProcessObject
swigCMemOwn
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Constructor Summary
ConstructorsModifierConstructorDescriptionitk::simple::BinaryGrindPeakImageFilter::BinaryGrindPeakImageFilter() Default Constructor that takes no arguments and initializes default parametersprotected
BinaryGrindPeakImageFilter
(long cPtr, boolean cMemoryOwn) -
Method Summary
Modifier and TypeMethodDescriptionvoid
delete()
virtual itk::simple::BinaryGrindPeakImageFilter::~BinaryGrindPeakImageFilter() DestructorImage itk::simple::BinaryGrindPeakImageFilter::Execute(const Image &image1) Execute the filter on the input imageprotected void
finalize()
void
Self& itk::simple::BinaryGrindPeakImageFilter::FullyConnectedOff()void
Self& itk::simple::BinaryGrindPeakImageFilter::FullyConnectedOn() Set the value of FullyConnected to true or false respectfully.double
double itk::simple::BinaryGrindPeakImageFilter::GetBackgroundValue() const Set the value in eroded part of the image.protected static long
double
double itk::simple::BinaryGrindPeakImageFilter::GetForegroundValue() const Get the value in the image considered as "foreground".boolean
bool itk::simple::BinaryGrindPeakImageFilter::GetFullyConnected() const Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity.getName()
std::string itk::simple::BinaryGrindPeakImageFilter::GetName() const Name of this classvoid
setBackgroundValue
(double BackgroundValue) Self& itk::simple::BinaryGrindPeakImageFilter::SetBackgroundValue(double BackgroundValue) Set the value in eroded part of the image.void
setForegroundValue
(double ForegroundValue) Self& itk::simple::BinaryGrindPeakImageFilter::SetForegroundValue(double ForegroundValue) Set the value in the image to consider as "foreground".void
setFullyConnected
(boolean FullyConnected) Self& itk::simple::BinaryGrindPeakImageFilter::SetFullyConnected(bool FullyConnected) Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity.protected static long
toString()
std::string itk::simple::BinaryGrindPeakImageFilter::ToString() const Print ourselves outMethods inherited from class org.itk.simple.ImageFilter
getCPtr, swigRelease
Methods inherited from class org.itk.simple.ProcessObject
abort, addCommand, debugOff, debugOn, getCPtr, getDebug, getGlobalDefaultCoordinateTolerance, getGlobalDefaultDebug, getGlobalDefaultDirectionTolerance, getGlobalDefaultNumberOfThreads, getGlobalDefaultThreader, getGlobalWarningDisplay, getNumberOfThreads, getNumberOfWorkUnits, getProgress, globalDefaultDebugOff, globalDefaultDebugOn, globalWarningDisplayOff, globalWarningDisplayOn, hasCommand, removeAllCommands, setDebug, setGlobalDefaultCoordinateTolerance, setGlobalDefaultDebug, setGlobalDefaultDirectionTolerance, setGlobalDefaultNumberOfThreads, setGlobalDefaultThreader, setGlobalWarningDisplay, setNumberOfThreads, setNumberOfWorkUnits, swigRelease
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Constructor Details
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BinaryGrindPeakImageFilter
protected BinaryGrindPeakImageFilter(long cPtr, boolean cMemoryOwn) -
BinaryGrindPeakImageFilter
public BinaryGrindPeakImageFilter()itk::simple::BinaryGrindPeakImageFilter::BinaryGrindPeakImageFilter() Default Constructor that takes no arguments and initializes default parameters
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Method Details
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getCPtr
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swigRelease
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finalize
protected void finalize()- Overrides:
finalize
in classImageFilter
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delete
public void delete()virtual itk::simple::BinaryGrindPeakImageFilter::~BinaryGrindPeakImageFilter() Destructor- Overrides:
delete
in classImageFilter
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setFullyConnected
public void setFullyConnected(boolean FullyConnected) Self& itk::simple::BinaryGrindPeakImageFilter::SetFullyConnected(bool FullyConnected) Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn. -
fullyConnectedOn
public void fullyConnectedOn()Self& itk::simple::BinaryGrindPeakImageFilter::FullyConnectedOn() Set the value of FullyConnected to true or false respectfully. -
fullyConnectedOff
public void fullyConnectedOff()Self& itk::simple::BinaryGrindPeakImageFilter::FullyConnectedOff() -
getFullyConnected
public boolean getFullyConnected()bool itk::simple::BinaryGrindPeakImageFilter::GetFullyConnected() const Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn. -
setForegroundValue
public void setForegroundValue(double ForegroundValue) Self& itk::simple::BinaryGrindPeakImageFilter::SetForegroundValue(double ForegroundValue) Set the value in the image to consider as "foreground". Defaults to maximum value of InputPixelType. -
getForegroundValue
public double getForegroundValue()double itk::simple::BinaryGrindPeakImageFilter::GetForegroundValue() const Get the value in the image considered as "foreground". Defaults to maximum value of InputPixelType. -
setBackgroundValue
public void setBackgroundValue(double BackgroundValue) Self& itk::simple::BinaryGrindPeakImageFilter::SetBackgroundValue(double BackgroundValue) Set the value in eroded part of the image. Defaults to zero -
getBackgroundValue
public double getBackgroundValue()double itk::simple::BinaryGrindPeakImageFilter::GetBackgroundValue() const Set the value in eroded part of the image. Defaults to zero -
getName
std::string itk::simple::BinaryGrindPeakImageFilter::GetName() const Name of this class- Overrides:
getName
in classProcessObject
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toString
std::string itk::simple::BinaryGrindPeakImageFilter::ToString() const Print ourselves out- Overrides:
toString
in classProcessObject
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execute
Image itk::simple::BinaryGrindPeakImageFilter::Execute(const Image &image1) Execute the filter on the input image
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